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Japan’s Atlantis? The 12,000-year-old mystery beneath the sea

Off the coast of Yonaguni Island in Japan’s Okinawa Prefecture lies a submerged structure that has captivated scientists, divers, and theorists alike. 
The Yonaguni Monument is a massive underwater rock formation off Japan’s southernmost island, featuring flat terraces, sharp angles, and steps that resemble a sunken pyramid. Discovered in 1986, it lies about 25 meters below the surface. While some scientists believe it’s a natural geological structure, others claim it may be remnants of a 10,000-year-old lost civilization. Unexplained carvings, possible stone roads, and megalithic shapes add to its mystery — sparking comparisons to Atlantis and fueling ongoing debate about its true origin. Photo: Vincent Lou, Wikipedia CC BY 2.0
The Yonaguni Monument is a massive underwater rock formation off Japan’s southernmost island, featuring flat terraces, sharp angles, and steps that resemble a sunken pyramid. Discovered in 1986, it lies about 25 meters below the surface. While some scientists believe it’s a natural geological structure, others claim it may be remnants of a 10,000-year-old lost civilization. Unexplained carvings, possible stone roads, and megalithic shapes add to its mystery — sparking comparisons to Atlantis and fueling ongoing debate about its true origin. Photo: Vincent Lou, Wikipedia CC BY 2.0

Known as the Yonaguni Monument, this underwater formation features massive stone terraces, sharp angles, and flat surfaces that resemble a man-made pyramid. The Yonaguni Monument was first discovered in 1986 by Kihachiro Aratake, a local diver and director of the Yonaguni-Cho Tourism Association.

Sonai is the largest village on Yonaguni Island, located at Japan’s westernmost point. Known for its remote beauty and strong cultural identity, Sonai is a quiet fishing and farming community with traditional Okinawan architecture, wild horse sightings, and views stretching toward Taiwan. The village also serves as a gateway for divers and researchers visiting the nearby Yonaguni Monument, adding mystery to its otherwise peaceful coastal life. Photo: Melkov, Wikipedia, CC0
Sonai is the largest village on Yonaguni Island, located at Japan’s westernmost point. Known for its remote beauty and strong cultural identity, Sonai is a quiet fishing and farming community with traditional Okinawan architecture, wild horse sightings, and views stretching toward Taiwan. The village also serves as a gateway for divers and researchers visiting the nearby Yonaguni Monument, adding mystery to its otherwise peaceful coastal life. Photo: Melkov, Wikipedia, CC0

While scouting for new dive sites off the coast of Yonaguni Island in Okinawa, Japan, Aratake noticed strange formations beneath the surface — large flat terraces, sharp angles, and what appeared to be steps cut into the rock.

He later described the moment:

«I thought at first it was just a natural rock formation. But the more I looked, the more it seemed like something made by people.» Kihachiro Aratake Discovered the monument in 1986

His discovery sparked decades of investigation, debate, and fascination, drawing in marine geologists, archaeologists, divers, and ancient civilization theorists from around the world.

A discovery beneath the waves

Aratake stumbled upon the structure while searching for new diving spots. Measuring approximately 164 feet in length and 65 feet in width, the monument's design includes spiraling steps and flat platforms. «I was very emotional when I found it,» Aratake recalled. «I realized that this would become a treasure of Yonaguni Island.» ​

 «I was very emotional when I found it. I realized that this would become a treasure of Yonaguni Island» Kihachiro Aratake

Theories and Debates

The monument's origin remains a topic of contention. Marine geologist Masaaki Kimura from Ryukyu University argues that the structure shows signs of human influence, suggesting it could be remnants of an ancient civilization. «I think it's very difficult to explain away their origins as being purely natural,» Kimura stated. ​


Conversely, other experts believe the formation is a natural geological occurrence. Geologist Robert Schoch from Boston University contends that the monument's features result from natural processes, such as tectonic activity and erosion. «The rocks of this group are also criss-crossed by numerous sets of parallel, vertically oriented joints in the rock ... These joints are natural,» Schoch explained.

Japan’s pre-ice age underwater pyramid continues to stir scientific debate, raising fresh questions about whether it could truly have been built by humans — or if its origins lie in a deeper, still-unexplained chapter of Earth’s history.


«Japan’s Atlantis»

The Yonaguni Monument is frequently called «Japan’s Atlantis» due to its massive, temple-like appearance beneath the sea. However, debate continues over whether the formation is the work of an ancient civilization or simply the result of natural geological processes.


The discussion recently resurfaced after a high-profile exchange between author Graham Hancock and archaeologist Flint Dibble on an episode of the Joe Rogan Experience in April 2024, where the site's origins were hotly contested.


«I've seen a lot of crazy natural stuff and I see nothing here that to me reminds me of human architecture,» Dibble said on the podcast in April 2024.

A Diver's perspective

Diver Kenzo Watanabe, who explored the site, remains convinced of its artificial origins. «After seeing it, there's no ... ,» Watanabe said. «Especially with all the flat surfaces ... .»

The ongoing mystery

The Yonaguni Monument continues to intrigue and puzzle researchers. Whether it's a natural formation or evidence of a lost civilization, the structure challenges our understanding of history and human development. As investigations persist, the monument remains a symbol of the mysteries that lie beneath the ocean's surface.​


For those interested in exploring this enigmatic site, Yonaguni Island offers diving tours to the monument, providing a firsthand glimpse into one of the world's most fascinating underwater mysteries.

Facts - Yonaguni Monument

  • Discovered: 1986 by diver Kihachiro Aratake

  • Location: Off the south coast of Yonaguni Island, Okinawa Prefecture, Japan

  • Depth: Approx. 25 meters (82 feet) underwater

  • Size: Around 150 meters long, 40 meters wide, 27 meters high

  • Appearance: Terraces, steps, flat surfaces, and sharp corners resembling a pyramid or ziggurat

  • Age (if man-made): Estimated up to 10,000–12,000 years old

  • Debate: Scholars are split — some say it's a natural sandstone formation shaped by tectonic activity, while others claim it's man-made, possibly from a lost civilization

  • Features: Possible carvings, roads, what appear to be pillars, platforms, and even a «face»

  • Theories: Linked to ancient Pacific cultures, Atlantis-like civilizations, or natural seismic activity

Visibility: Popular diving site with guided tours from Yonaguni Island

Yonaguni is Japan’s westernmost island, known for its rugged beauty, clear diving waters, and mysterious underwater monument. A remote and windswept gem near Taiwan, the island offers unique attractions like the Yonaguni Monument, traditional Okinawan culture, and panoramic coastal views. One of its most beloved sights is the Yonaguni horse — a rare, small native breed that roams freely through open fields and village paths, adding charm to the island’s quiet, timeless atmosphere. Photo: Hideyuki Kamon, Flickr CC BY 2.0
Yonaguni is Japan’s westernmost island, known for its rugged beauty, clear diving waters, and mysterious underwater monument. A remote and windswept gem near Taiwan, the island offers unique attractions like the Yonaguni Monument, traditional Okinawan culture, and panoramic coastal views. One of its most beloved sights is the Yonaguni horse — a rare, small native breed that roams freely through open fields and village paths, adding charm to the island’s quiet, timeless atmosphere. Photo: Hideyuki Kamon, Flickr CC BY 2.0

Facts - Yonaguni Island

  • Location: Japan’s westernmost inhabited island, part of Okinawa Prefecture

  • Distance: About 125 km east of Taiwan

  • Population: Around 1,700 residents

  • Main village: Sonai

  • Languages: Japanese and Yonaguni (a Ryukyuan language)

  • Geography: Rugged coastline, coral reefs, forested hills, and open plains

  • Economy: Primarily fishing, sugarcane farming, and tourism

  • Wildlife: Known for Yonaguni horses — a native, semi-wild pony breed

  • Access: Flights from Okinawa’s main islands and ferries (though infrequent)

  • Notable for: Yonaguni Monument diving, whale watching, traditional weaving, and being the last place in Japan to see the sunset each day

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